Scaffold Ga0208232_1015293

Overview

Basic Information

• Taxon OID: 3300020527
• Scaffold ID: Ga0208232_1015293
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 24AUG2012 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1140
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024484	Metagenome / Metatranscriptome	205	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208232_10152932	F024484	AGG	MLSKTSYTVDTSLFREACLQLPNEGMKTTINQPTGNFFYDPWILKDEYKGTVWETLYNSLPVDKGEARIIILDPAHCYQTHADIDDRYHLNILGEACYLIDLVKEQMHGLEQDGVWYDMDAGLLHTATNFGRRARVQLVVRHLLKKNELLDPVEIVLSSTVSNTDDTRFIFDNTLSPWLNQANKLGYINNFSYSPITVKFNIEKNKLDLFKSILPAEFSLL